Massive data collection holds the promise of a better understanding of complex phenomena and ultimately, of better decisions. An exciting opportunity in this regard stems from the growing availability of perturbation / intervention data (drugs, knockouts, overexpression, etc.) in biology. In order to obtain mechanistic insights from such data, a major challenge is the development of a framework that integrates observational and interventional data and allows predicting the effect of yet unseen interventions or transporting the effect of interventions observed in one context to another. I will present a framework for causal structure discovery based on such data and highlight the role of overparameterized autoencoders. We end by demonstrating how these ideas can be applied for drug repurposing in the current SARS-CoV-2 crisis.